Incorporating species losses and gains into a fish-based index for stream bioassessment increases the detection of anthropogenic disturbances

The taxonomic completeness index (ratio of observed to expected species; O/E) is widely used in stream bioassessment programs to infer ecological impairment. However, its sensitivity to detecting anthropogenic disturbances may be reduced by (1) the modelling procedure used to determine the expected species at a site (2) the inability of the index to account for assemblage shifts through species gains as well as losses; and (3) the frequent use of a threshold that only allows assessment of the absence of prevalent species. We used a version of the BC biotic index (an adaptation of Bray-Curtis distance) that incorporated alien and translocated species into the observed component, and generated expected native species probabilities using single species ensemble models (‘BC_A’). Sensitivity analysis, bivariate correlations and multiple linear regression analyses were used to test whether BC_A better detected anthropogenic disturbances than the standard BC (i.e. without alien and translocated species) and O/E₅₀ derived from the same models. We also tested three additional fish biotic indices currently used in the Ecosystem Health Monitoring Program in Southeast Queensland, Australia. Of the indices tested, BC_A explained the greatest amount of variance in anthropogenic disturbance variables, followed by BC and the proportional sample abundance of alien species. The BC_A index was 18% more sensitive to detecting non-reference conditions, 20% more responsive to an anthropogenic disturbance gradient, and had twice the number of significant bivariate correlations with disturbance variables than the O/E₅₀ index derived from the same underlying predictive model. We suggest that the improved performance of BC_A relative to O/E₅₀ lies in its ability to detect the addition of alien, translocated, and some native species whose traits allow them to persist or thrive in degraded conditions, and the inclusion of low prevalence taxa that may be sensitive to mild levels of disturbance. Given that generation of the BC_A index requires no further information than already provided by traditional multivariate predictive models, we recommend its inclusion into bioassessment programs that use multivariate fish based indices.     

Carbon cycle of larch plantation based on CO2FIX model

Aims
Plantations play important roles in modifying regional carbon budget and maintaining regional carbon balance. In this study, we assessed larch plantation (Larix gmelinii var. principis-rupprechtii) carbon dynamics in Weichang County from a perspective of the forest biomass-soil-wood-products chain. Our objectives were to elucidate the carbon sink capacity of larch plantation and the influences of biomass, soil and wood product pools on carbon balance.
Methods
CO2FIX model was used to evaluate the carbon storage and flow of larch plantation over a time span of 120 years. Input data for model were derived from practical investigations and published papers. We validated the simulated results and found that this model was suitable in the region and the simulated results were reliable.
Important findings
(1) Soil was the largest carbon pool for larch plantation and the wood product pool had the smallest carbon storage. Meanwhile, carbon storage in wood products gradually increased with time. (2) In a rotation of 50 years from secondary poplar-birch forest to larch plantation, 250 t C·hm^-2 was sequestrated by the larch plantation. 70% of the carbon was transferred into soil in the form of litter and logging slash and the other 30% was transferred into wood products. (3) Larch plantation was a carbon sink during most of its growing period and turned to temporary carbon source when it was harvested. Larch plantation could sequestrate about 0.3 t C·hm^-2·a^-1 in the long term. Our results indicated the importance of wood product carbon pool in carbon dynamics of plantation, which facilitated our understanding in the carbon dynamics and capacity of plantation.     

Characterization of Viticultural Terroirs using a Simple Field Model Based on Soil Depth – II. Validation of the Grape Yield and Berry Quality in the Anjou Vineyard (France)

Soil and climate are major constituents of the French notion of Terroir. This concept implies that there is a strong relationship between the composition of the grape, the characteristics of the wine and the territory of production. To study this link, a new method of characterization of the Terroir, including geological and pedological factors, was investigated. It uses a field model based on depth and clay content of soil, together with the degree of weathering of the parent rock. Consequently, for every type of parent rock belonging to a given geologic stage, there are a series of soils that show different stages of pedological evolution. According to the model, three kinds of soils are distinguished with regards to the weathering intensity of the parent rock, that are named weakly weathered rock (WWR), moderately weathered rock (MWR) and strongly weathered rock (SWR). By hypothesis, each soil type is considered as a homogeneous unit for vine production from the viewpoint of ecophysiological factors. Each terroir unit defined by this method is called a Basic Terroir Unit (BTU). To validate this hypothesis, experimental plots planted with Chenin and Cabernet Franc vines were studied over three consecutive seasons (2000–2002), in the Anjou vineyard (Loire Valley – France). The major BTUs developed on the two most important geological systems of Anjou (Brioverian and Ordovician–Devonian), were studied. Results showed that the berries of vines cultivated in WWR were significantly smaller, richer in sugars and anthocyanins and had a Total Phenolic Index higher than those of the vines cultivated in SWR. They also had a lower titratable acidity. Cabernet Franc vines cultivated in MWR had berries with sugar and anthocyanin contents but also total phenolics very close to those of WWR. With Chenin vines there was a good relationship between the global pool of free aromas of berries and the BTU type. The study showed significant relationships between the quality of grapes and the measured values of several ecophysiological variables such as the water supply regime or the timing of budburst.     

Relationships of growth,stable carbon isotope composition and anatomical properties of leaf and xylem in seven mulberry cultivars: a hint towards drought tolerance

• The fast growth of mulberry depends on high water consumption, but considerable variations in drought tolerance exist across different cultivars. Physiological and anatomical mechanisms are important to plant survival under drought. However, few research efforts have been made to reveal the relationships of these two aspects in relation to drought tolerance.
• In this study, growth rates, leaf functional physiology and anatomical characteristics of leaf and xylem of 1‐year‐old saplings of seven mulberry cultivars at a common garden were compared. Their relationships were also explored.
• Growth, leaf physiology and anatomy were significantly different among the tested cultivars. Foliar stable carbon isotope composition (δ¹³C) was negatively correlated with growth rates, and closely related to several leaf and xylem anatomical traits. Particularly, leaf thickness, predicted hydraulic conductivity and vessel element length jointly contributed 77% of the variability in δ¹³C. Cultivar Wupu had small stomata, intermediate leaf thickness, the smallest hydraulically weighted vessel diameter and highest vessel number, and higher δ¹³C; Yunguo1 had high abaxial stomatal density, low specific leaf area, moderate hydraulic conductivity and δ¹³C; these are beneficial features to reduce leaf water loss and drought‐induced xylem embolism in arid areas. Cultivar Liaolu11 had contrasting physiological and anatomical traits compared with the previous two cultivars, suggesting that it might be sensitive to drought.
• Our findings indicate that growth and δ¹³C are closely associated with both leaf and xylem anatomical characteristics in mulberry, which provides fundamental information to assist evaluation of drought tolerance in mulberry cultivars and in other woody trees.

     

Interactions of a Bacterial RND Transporter with a Transmembrane Small Protein in a Lipid Environment

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Age,growth and reproduction of Marcusenius pongolensis,Oreochromis mossambicus and Schilbe intermedius in an oligotrophic impoundment in Swaziland

The age, growth and reproductive biology of Marcusenius pongolensis, Oreochromis mossambicus and Schilbe intermedius were investigated in the Mnjoli Dam, Swaziland. Otolith annulus formation occurred in winter for M. pongolensis, and in spring/summer for O. mossambicus and S. intermedius. Maximum ages of 8, 6 and 8 years were recorded for M. pongolensis, O. mossambicus and S. intermedius, respectively. Growth was described by the von Bertalanffy growth model as L_t = 238.73(1 − exp^{−0.27(t+2.27}) mm fork length (FL) for M. pongolensis, L_t = 226.83(1 − exp^{−0.45(t+2.02)}) mm total length (TL) for O. mossambicus, and L_t = 214.59(1 − exp^{−0.60(t+1.20)}) mm FL for S. intermedius. Sexual maturity was estimated for male and female M. pongolensis at 134 mm FL and 119 mm FL, respectively. Marcusenius pongolensis matured within their first year. Female O. mossambicus and S. intermedius matured at 239 mm TL and 205 mm FL, corresponding to 2 and 4 years of age, respectively. Extended spawning periods, with two spawning peaks was observed for M. pongolensis, one in spring (September) and the second in autumn (March) and one peak over late‐summer for S. intermedius.     

Alternative biofacies model for dysaerobic communities

An abundant calcareous fauna has been discovered in the oxygen minimum zone (OMZ; < 0.5 ml/l O₂) off central California at oxygen concentrations considerably less than those predicted by previous ecological models. Analysis of box core samples and bottom photographs has revealed a distinct depth zonation of echinoderms. Asteroids and ophiuroids are most abundant along the upper and lower edges of the OMZ, respectively, whereas echinoids are found near the core of this zone where oxygen levels are as low as 0.3 ml/l O₂. As these heart urchins are very abundant (14/m²), they represent a potentially significant component of the fossil record of OMZ's. Locally these urchins are capable of disturbing over 90% of near surface sediment. The core of the OMZ is inhabited by hermit crabs that actively transport and recycle gastropod shells. This 'biotransport' results in an accumulation of potentially preservable, non-endemic. hard-bodied organisms which may lead to misinterpretation of paleo-oxygenation conditions. We propose an alternative to the Rhoads & Morse (1971, Lethaia 4 ) biofacies model for open-ocean, dysaerobic environments which consists of: (1) a zone devoid of maeroinvertebrates. characterized by laminated sediments (<0.1 ml/l O₂); (2) a zone dominated by small (1–2 mm) soft-bodied infauca which exhibits moderate disturbance of laminae due to bioturbation (0.1–0.3 ml/l O₂); and (3) a zone inhabited by an abundant calcareous fauna characterized by highly bioturbated sediments (>0.3 ml/l O₂).